SequenceIOHandler Class Reference

pure abstract base class for entity io handlers More...

#include <sequence_io_handler.hh>

Inherited by ClustalIOHandler, ClustalIOHandler, FastaIOHandler, FastaIOHandler, PirIOHandler, PirIOHandler, PromodIOHandler, and PromodIOHandler.

Public Member Functions
virtual	~SequenceIOHandler ()
virtual void	Import (seq::SequenceList &sequences, const boost::filesystem::path &loc)=0
virtual void	Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const =0
virtual void	Import (seq::SequenceList &ent, std::istream &instream)=0
virtual void	Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const =0
virtual	~SequenceIOHandler ()
virtual void	Import (seq::SequenceList &sequences, const boost::filesystem::path &loc)=0
virtual void	Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const =0
virtual void	Import (seq::SequenceList &ent, std::istream &instream)=0
virtual void	Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const =0

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Detailed Description

pure abstract base class for entity io handlers

Definition at line 33 of file sequence_io_handler.hh.

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Constructor & Destructor Documentation

virtual ~SequenceIOHandler

(

)

[inline, virtual]

Definition at line 35 of file sequence_io_handler.hh.

virtual ~SequenceIOHandler

(

)

[inline, virtual]

Definition at line 35 of file sequence_io_handler.hh.

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Member Function Documentation

virtual void Export	(	const seq::ConstSequenceList &	ent,
		std::ostream &	ostream
	)			const [pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	ent,
		const boost::filesystem::path &	loc
	)			const [pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	ent,
		std::ostream &	ostream
	)			const [pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	ent,
		const boost::filesystem::path &	loc
	)			const [pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Import	(	seq::SequenceList &	ent,
		std::istream &	instream
	)			[pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Import	(	seq::SequenceList &	sequences,
		const boost::filesystem::path &	loc
	)			[pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Import	(	seq::SequenceList &	ent,
		std::istream &	instream
	)			[pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

virtual void Import	(	seq::SequenceList &	sequences,
		const boost::filesystem::path &	loc
	)			[pure virtual]

Implemented in ClustalIOHandler, FastaIOHandler, PirIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, and PromodIOHandler.

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The documentation for this class was generated from the following files:

• stage/include/ost/io/seq/sequence_io_handler.hh
• stage/include/ost/io/sequence_io_handler.hh