_lDDTDecomposer Class Reference

Inherited by _lDDTGreedySearcher.

Public Member Functions
def	__init__
def	lDDT
def	lDDTFromFlatMap
def	SCCounts
def	IntCounts

Data Fields
	ref
	mdl
	ref_mdl_alns
	inclusion_radius
	thresholds
	ref_chains
	ref_interfaces
	single_chain_scorer
	single_chain_cache
	interface_scorer
	interface_cache
	n

Detailed Description

Definition at line 2043 of file chain_mapping.py.

Constructor & Destructor Documentation

def __init__	(		self,
			ref,
			mdl,
			ref_mdl_alns,
			inclusion_radius = 15.0,
			thresholds = [0.5
	)

Compute backbone only lDDT scores for ref/mdl

Uses the pairwise decomposable property of backbone only lDDT and
implements a caching mechanism to efficiently enumerate different
chain mappings. 

Definition at line 2046 of file chain_mapping.py.

Member Function Documentation

def IntCounts	(		self,
			ref_ch1,
			ref_ch2,
			mdl_ch1,
			mdl_ch2
	)

Definition at line 2168 of file chain_mapping.py.

def lDDT	(		self,
			ref_chain_groups,
			mdl_chain_groups
	)

Definition at line 2124 of file chain_mapping.py.

def lDDTFromFlatMap	(		self,
			flat_map
	)

Definition at line 2134 of file chain_mapping.py.

def SCCounts	(		self,
			ref_ch,
			mdl_ch
	)

Definition at line 2153 of file chain_mapping.py.

Field Documentation

inclusion_radius

Definition at line 2057 of file chain_mapping.py.

interface_cache

Definition at line 2079 of file chain_mapping.py.

interface_scorer

Definition at line 2074 of file chain_mapping.py.

mdl

Definition at line 2055 of file chain_mapping.py.

n

Definition at line 2081 of file chain_mapping.py.

ref

Definition at line 2054 of file chain_mapping.py.

ref_chains

Definition at line 2061 of file chain_mapping.py.

ref_interfaces

Definition at line 2062 of file chain_mapping.py.

ref_mdl_alns

Definition at line 2056 of file chain_mapping.py.

single_chain_cache

Definition at line 2070 of file chain_mapping.py.

single_chain_scorer

Definition at line 2066 of file chain_mapping.py.

thresholds

Definition at line 2058 of file chain_mapping.py.

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The documentation for this class was generated from the following file:

• build-2.7-doc/stage/lib64/python3.6/site-packages/ost/mol/alg/chain_mapping.py