_lDDTGreedySearcher Class Reference

Inherits _lDDTDecomposer.

Public Member Functions
def	__init__
def	ExtendMapping
Public Member Functions inherited from _lDDTDecomposer
def	__init__
def	lDDT
def	lDDTFromFlatMap
def	SCCounts
def	IntCounts

Data Fields
	steep_opt_rate
	neighbors
	ref_chem_groups
	mdl_chem_groups
	ref_ch_group_mapper
	mdl_ch_group_mapper
	mdl_neighbors
Data Fields inherited from _lDDTDecomposer
	ref
	mdl
	ref_mdl_alns
	inclusion_radius
	thresholds
	ref_chains
	ref_interfaces
	single_chain_scorer
	single_chain_cache
	interface_scorer
	interface_cache
	n

Detailed Description

Definition at line 2188 of file chain_mapping.py.

Constructor & Destructor Documentation

def __init__	(		self,
			ref,
			mdl,
			ref_chem_groups,
			mdl_chem_groups,
			ref_mdl_alns,
			inclusion_radius = 15.0,
			thresholds = [0.5,
			steep_opt_rate = None
	)

Greedy extension of already existing but incomplete chain mappings

Definition at line 2192 of file chain_mapping.py.

Member Function Documentation

def ExtendMapping	(		self,
			mapping,
			max_ext = None
	)

Definition at line 2229 of file chain_mapping.py.

Field Documentation

mdl_ch_group_mapper

Definition at line 2208 of file chain_mapping.py.

mdl_chem_groups

Definition at line 2206 of file chain_mapping.py.

mdl_neighbors

Definition at line 2218 of file chain_mapping.py.

neighbors

Definition at line 2199 of file chain_mapping.py.

ref_ch_group_mapper

Definition at line 2207 of file chain_mapping.py.

ref_chem_groups

Definition at line 2205 of file chain_mapping.py.

steep_opt_rate

Definition at line 2198 of file chain_mapping.py.

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The documentation for this class was generated from the following file:

• build-2.7-doc/stage/lib64/python3.6/site-packages/ost/mol/alg/chain_mapping.py