▼ build-2.9.2 | |
▼ stage | |
▼ include | |
▼ ost | |
► bindings | |
wrap_tmalign.hh | |
► conop | |
amino_acids.hh | |
compound.hh | |
compound_lib.hh | |
compound_lib_base.hh | |
conop.hh | |
diag.hh | |
heuristic.hh | |
minimal_compound_lib.hh | |
model_check.hh | |
module_config.hh | |
processor.hh | |
ring_finder.hh | |
rule_based.hh | |
► db | |
binary_container.hh | |
extract_data_helper.hh | |
linear_indexer.hh | |
module_config.hh | |
sqlite_conv.hh | |
sqlite_wrap.hh | |
► export_helper | |
generic_property_def.hh | |
pair_to_tuple_conv.hh | |
vec_to_list_conv.hh | |
► geom | |
► export_helper | |
vector.hh | |
aligned_cuboid.hh | |
circular_iterator.hh | |
composite.hh | |
composite2.hh | |
composite2_op.hh | |
composite3.hh | |
composite3_op.hh | |
composite_op.hh | |
constants.hh | |
def.hh | |
exc.hh | |
geom.hh | |
mat.hh | |
mat2.hh | |
mat3.hh | |
mat4.hh | |
module_config.hh | |
point_cloud.hh | |
quat.hh | |
transform.hh | |
vec.hh | |
vec2.hh | |
vec3.hh | |
vec4.hh | |
vec_mat_predicates.hh | |
vecmat2_op.hh | |
vecmat3_op.hh | |
vecmat4_op.hh | |
vecmat_op.hh | |
► gfx | |
► color_ops | |
basic_gradient_color_op.hh | |
by_chain_color_op.hh | |
by_element_color_op.hh | |
color_op.hh | |
entity_view_color_op.hh | |
gradient_color_op.hh | |
gradient_level_color_op.hh | |
map_handle_color_op.hh | |
uniform_color_op.hh | |
► impl | |
backbone_trace.hh | |
cartoon_renderer.hh | |
connect_renderer_base.hh | |
cpk_renderer.hh | |
custom_renderer.hh | |
debug_renderer.hh | |
entity_detail.hh | |
entity_renderer.hh | |
entity_renderer_fw.hh | |
fast_spheres.hh | |
line_trace_renderer.hh | |
map_iso_gen.hh | |
map_iso_gen_s.hh | |
map_iso_spec.hh | |
map_octree.hh | |
mapped_property.hh | |
octree_isocont.hh | |
scene_fx.hh | |
simple_renderer.hh | |
sline_renderer.hh | |
tabulated_trig.hh | |
trace_renderer.hh | |
trace_renderer_base.hh | |
► render_options | |
cartoon_render_options.hh | |
cpk_render_options.hh | |
custom_render_options.hh | |
line_render_options.hh | |
line_trace_render_options.hh | |
render_options.hh | |
simple_render_options.hh | |
sline_render_options.hh | |
trace_render_options.hh | |
bitmap_io.hh | |
collada_exporter.hh | |
color.hh | |
entity.hh | |
entity_fw.hh | |
exporter.hh | |
exporter_fw.hh | |
gfx.hh | |
gfx_fw.hh | |
gfx_node.hh | |
gfx_node_fw.hh | |
gfx_node_visitor.hh | |
gfx_object.hh | |
gfx_object_base.hh | |
gfx_object_fw.hh | |
gfx_prim.hh | |
gfx_test_object.hh | |
gl_helper.hh | |
gl_include.hh | |
glext_include.hh | |
glwin_base.hh | |
gost_exporter.hh | |
gradient.hh | |
gradient_manager.hh | |
input.hh | |
map_handle_color_op.hh | |
map_iso.hh | |
map_iso_prop.hh | |
map_slab.hh | |
material.hh | |
module_config.hh | |
povray.hh | |
povray_fw.hh | |
prim_list.hh | |
primitives.hh | |
render_mode.hh | |
render_pass.hh | |
scene.hh | |
scene_observer.hh | |
selection.hh | |
shader.hh | |
surface.hh | |
symmetry_node.hh | |
texture.hh | |
vertex_array.hh | |
vertex_array_helper.hh | |
► gui | |
► data_viewer | |
argand.hh | |
data_viewer.hh | |
data_viewer_panel.hh | |
data_viewer_panel_base.hh | |
draw_overlay.hh | |
drawing_functions.hh | |
fft_panel.hh | |
img2qt.hh | |
info_panel.hh | |
mask_overlay.hh | |
null_overlay.hh | |
overlay.hh | |
overlay_base.hh | |
overlay_base_fw.hh | |
overlay_manager.hh | |
overlay_manager_fw.hh | |
overlay_manager_gui.hh | |
overlay_manager_observer.hh | |
pointlist_overlay.hh | |
pointlist_overlay_base.hh | |
strategies.hh | |
strategies_fw.hh | |
viewer_normalizer.hh | |
► messages | |
log_reader.hh | |
message_box_widget.hh | |
message_widget.hh | |
► panels | |
bottom_bar.hh | |
button_bar.hh | |
button_box.hh | |
drop_box.hh | |
event_button.hh | |
panel_bar.hh | |
panel_bar_widget_holder.hh | |
panel_manager.hh | |
panel_widget_container.hh | |
side_bar.hh | |
splitter_panel_bar.hh | |
tabbed_panel_bar.hh | |
► python_shell | |
completer_base.hh | |
dir_model.hh | |
gutter.hh | |
main_thread_runner.hh | |
output_redirector.hh | |
path_completer.hh | |
python_completer.hh | |
python_context_parser.hh | |
python_interpreter.hh | |
python_interpreter_worker.hh | |
python_shell.hh | |
python_shell_fw.hh | |
python_shell_text_document_layout.hh | |
python_shell_widget.hh | |
python_syntax_highlighter.hh | |
python_tokenizer.hh | |
shell_history.hh | |
state.hh | |
state_machine.hh | |
text_logger.hh | |
transition.hh | |
transition_guard.hh | |
► scene_win | |
context_menu.hh | |
current_selection_node.hh | |
custom_part_node.hh | |
entity_node.hh | |
entity_part_node.hh | |
gfx_scene_node.hh | |
label_node.hh | |
render_mode_node.hh | |
render_modes_node.hh | |
root_node.hh | |
scene_node.hh | |
scene_win.hh | |
scene_win_model.hh | |
► sequence_viewer | |
align_properties_painter.hh | |
alignment_view_object.hh | |
background_painter.hh | |
base_row.hh | |
base_view_object.hh | |
conservation_painter.hh | |
painter.hh | |
secstr_row.hh | |
seq_secstr_painter.hh | |
seq_selection_painter.hh | |
seq_text_painter.hh | |
sequence_delegate.hh | |
sequence_model.hh | |
sequence_row.hh | |
sequence_search_bar.hh | |
sequence_table_view.hh | |
sequence_view_object.hh | |
sequence_viewer.hh | |
tick_painter.hh | |
title_row.hh | |
► tools | |
manipulator.hh | |
map_tool.hh | |
measure_tool.hh | |
mouse_event.hh | |
selection_tool.hh | |
tool.hh | |
tool_bar.hh | |
tool_manager.hh | |
tool_option.hh | |
tool_option_group.hh | |
tool_options.hh | |
tool_options_widget.hh | |
tool_options_win.hh | |
admin.hh | |
dock_widget.hh | |
file_browser.hh | |
file_loader.hh | |
file_type_dialog.hh | |
file_viewer.hh | |
gl_canvas.hh | |
gl_win.hh | |
gosty_app.hh | |
main.hh | |
main_area.hh | |
main_window.hh | |
module_config.hh | |
perspective.hh | |
scene_menu.hh | |
scene_selection.hh | |
thin_splitter.hh | |
widget.hh | |
widget_geom_handler.hh | |
widget_pool.hh | |
widget_registry.hh | |
widget_state_saver.hh | |
► img | |
► alg | |
alg_mirror.hh | |
alg_shift.hh | |
alg_transform.hh | |
anisotropic.hh | |
auto_correlate.hh | |
clear.hh | |
clip_min_max.hh | |
conjugate.hh | |
convolute.hh | |
correlate.hh | |
cross_correlate.hh | |
density_slice.hh | |
dft.hh | |
discrete_shrink.hh | |
fft.hh | |
fftw_helper.hh | |
fill.hh | |
filter.hh | |
fourier_filters.hh | |
fractional_shift.hh | |
gaussian.hh | |
gaussian_gradient_magnitude.hh | |
gaussian_laplacian.hh | |
highest_peak_search_3d.hh | |
histogram.hh | |
line_average.hh | |
line_iterator.hh | |
local_sigma_threshold.hh | |
mask_image.hh | |
module_config.hh | |
negate.hh | |
norm.hh | |
norm_linear.hh | |
norm_log.hh | |
norm_od.hh | |
normalizer.hh | |
normalizer_factory.hh | |
polar.hh | |
power_spectrum.hh | |
randomize.hh | |
rscrosscorr.hh | |
smooth_mask_image.hh | |
stat.hh | |
stat_accumulator.hh | |
stat_min_max.hh | |
threshold.hh | |
transcendentals.hh | |
transform.hh | |
transform_fw.hh | |
transformation_base.hh | |
transformations.hh | |
► image_state | |
dispatch.hh | |
image_state.hh | |
image_state_algorithm.hh | |
image_state_base.hh | |
image_state_base_fw.hh | |
image_state_def.hh | |
image_state_factory.hh | |
image_state_frequency_domain.hh | |
image_state_fw.hh | |
image_state_half_frequency_domain.hh | |
image_state_impl.hh | |
image_state_spatial_domain.hh | |
image_state_visitor.hh | |
image_state_visitor_fw.hh | |
index.hh | |
type_fw.hh | |
value_holder.hh | |
► raster_image | |
raster_image.hh | |
algorithm.hh | |
circle_mask.hh | |
composite_mask.hh | |
data.hh | |
data_algorithm.hh | |
data_observer.hh | |
data_types.hh | |
debug.hh | |
dllexport.hh | |
extent.hh | |
extent_iterator.hh | |
extent_mask.hh | |
image.hh | |
image_factory.hh | |
image_fw.hh | |
image_handle.hh | |
image_handle_fw.hh | |
image_impl.hh | |
image_list.hh | |
image_state.hh | |
image_state_fw.hh | |
inverted_mask.hh | |
map.hh | |
mask.hh | |
mask_base.hh | |
mask_base_fw.hh | |
mask_info_convert.hh | |
mask_op.hh | |
mask_visitor.hh | |
module_config.hh | |
normalizer_fw.hh | |
normalizer_impl.hh | |
null_data.hh | |
observable.hh | |
paste_impl.hh | |
peak.hh | |
phase.hh | |
physical_units.hh | |
pixel_sampling.hh | |
point.hh | |
point_list.hh | |
polygon_mask.hh | |
progress.hh | |
size.hh | |
spherical_mask.hh | |
util.hh | |
value_util.hh | |
vecmat.hh | |
► info | |
geom_info_conversion.hh | |
info.hh | |
info_error.hh | |
info_fw.hh | |
info_group.hh | |
info_handle.hh | |
info_impl.hh | |
info_impl_fw.hh | |
info_item.hh | |
info_path.hh | |
info_set.hh | |
info_verbose_visitor.hh | |
info_visitor.hh | |
item_type.hh | |
item_type_cast.hh | |
module_config.hh | |
► io | |
► img | |
image_format.hh | |
jpk_util.hh | |
load_map.hh | |
map_io_dat_handler.hh | |
map_io_df3_handler.hh | |
map_io_dm3_handler.hh | |
map_io_dx_handler.hh | |
map_io_handler.hh | |
map_io_ipl_handler.hh | |
map_io_jpk_handler.hh | |
map_io_mrc_handler.hh | |
map_io_nanoscope_handler.hh | |
map_io_png_handler.hh | |
map_io_situs_handler.hh | |
map_io_spi_handler.hh | |
map_io_tiff_handler.hh | |
tiff_util.hh | |
► mol | |
chemdict_parser.hh | |
dcd_io.hh | |
entity_io_crd_handler.hh | |
entity_io_handler.hh | |
entity_io_mae_handler.hh | |
entity_io_mmcif_handler.hh | |
entity_io_pdb_handler.hh | |
entity_io_pqr_handler.hh | |
entity_io_sdf_handler.hh | |
io_profile.hh | |
load_entity.hh | |
load_surface.hh | |
mmcif_info.hh | |
mmcif_reader.hh | |
mmcif_str.hh | |
mmcif_writer.hh | |
omf.hh | |
pdb_reader.hh | |
pdb_str.hh | |
pdb_writer.hh | |
save_entity.hh | |
sdf_reader.hh | |
sdf_str.hh | |
sdf_writer.hh | |
star_parser.hh | |
star_writer.hh | |
stereochemical_params_reader.hh | |
surface_io_handler.hh | |
surface_io_msms_handler.hh | |
► seq | |
clustal_io_handler.hh | |
fasta_io_handler.hh | |
hhm_io_handler.hh | |
load.hh | |
pir_io_handler.hh | |
profile_io_handler.hh | |
promod_io_handler.hh | |
pssm_io_handler.hh | |
save.hh | |
sequence_io_handler.hh | |
binary_data_sink.hh | |
binary_data_source.hh | |
chemdict_parser.hh | |
clustal_io_handler.hh | |
container_serialization.hh | |
convert.hh | |
converting_streams.hh | |
dcd_io.hh | |
entity_io_crd_handler.hh | |
entity_io_handler.hh | |
entity_io_mae_handler.hh | |
entity_io_mmcif_handler.hh | |
entity_io_pdb_handler.hh | |
entity_io_pqr_handler.hh | |
entity_io_sdf_handler.hh | |
fasta_io_handler.hh | |
formatted_line.hh | |
hhm_io_handler.hh | |
image_format.hh | |
io_exception.hh | |
io_manager.hh | |
io_profile.hh | |
io_utils.hh | |
jpk_util.hh | |
load.hh | |
load_entity.hh | |
load_map.hh | |
load_surface.hh | |
map_io_dat_handler.hh | |
map_io_df3_handler.hh | |
map_io_dm3_handler.hh | |
map_io_dx_handler.hh | |
map_io_handler.hh | |
map_io_ipl_handler.hh | |
map_io_jpk_handler.hh | |
map_io_mrc_handler.hh | |
map_io_nanoscope_handler.hh | |
map_io_png_handler.hh | |
map_io_situs_handler.hh | |
map_io_spi_handler.hh | |
map_io_tiff_handler.hh | |
mmcif_info.hh | |
mmcif_reader.hh | |
mmcif_str.hh | |
mmcif_writer.hh | |
module_config.hh | |
omf.hh | |
pdb_reader.hh | |
pdb_str.hh | |
pdb_writer.hh | |
pir_io_handler.hh | |
profile_io_handler.hh | |
promod_io_handler.hh | |
pssm_io_handler.hh | |
save.hh | |
save_entity.hh | |
sdf_reader.hh | |
sdf_str.hh | |
sdf_writer.hh | |
sequence_io_handler.hh | |
star_parser.hh | |
star_writer.hh | |
stereochemical_params_reader.hh | |
surface_io_handler.hh | |
surface_io_msms_handler.hh | |
swap_util.hh | |
tiff_util.hh | |
► mol | |
► alg | |
accessibility.hh | |
adjacency_bitmap.hh | |
biounit.hh | |
clash_score.hh | |
consistency_checks.hh | |
construct_cbeta.hh | |
contact_overlap.hh | |
distance_rmsd_test.hh | |
distance_test_common.hh | |
domain_find.hh | |
entity_to_density.hh | |
filter_clashes.hh | |
find_membrane.hh | |
gdt.hh | |
local_dist_diff_test.hh | |
module_config.hh | |
molck.hh | |
nonstandard.hh | |
pdbize.hh | |
sec_struct.hh | |
sec_structure_segments.hh | |
similarity_matrix.hh | |
structure_analysis.hh | |
superpose_frames.hh | |
svd_superpose.hh | |
trajectory_analysis.hh | |
► impl | |
atom_group.hh | |
atom_impl.hh | |
atom_impl_fw.hh | |
atom_prop.hh | |
chain_impl.hh | |
chain_impl_fw.hh | |
connector_impl.hh | |
connector_impl_fw.hh | |
dihedral.hh | |
entity_impl.hh | |
entity_impl_fw.hh | |
fragment_impl.hh | |
fragment_impl_fw.hh | |
pointer_iterator.hh | |
query_ast.hh | |
query_ast_fw.hh | |
query_impl.hh | |
query_impl_fw.hh | |
residue_impl.hh | |
residue_impl_fw.hh | |
surface_impl.hh | |
surface_impl_fw.hh | |
torsion_impl.hh | |
torsion_impl_fw.hh | |
► mm | |
block_modifiers.hh | |
buildingblock.hh | |
ff_reader.hh | |
forcefield.hh | |
gromacs_block_modifiers.hh | |
heuristic_block_modifiers.hh | |
index.hh | |
interaction.hh | |
modeller.hh | |
observer.hh | |
settings.hh | |
simulation.hh | |
state_extractor.hh | |
steep.hh | |
system_creator.hh | |
topology.hh | |
topology_creator.hh | |
atom_base.hh | |
atom_handle.hh | |
atom_view.hh | |
bond_handle.hh | |
bond_table.hh | |
bounding_box.hh | |
builder.hh | |
chain_base.hh | |
chain_handle.hh | |
chain_type.hh | |
chain_view.hh | |
chem_class.hh | |
chem_type.hh | |
coord_frame.hh | |
coord_group.hh | |
coord_source.hh | |
editor_base.hh | |
editor_type_fw.hh | |
entity_base.hh | |
entity_handle.hh | |
entity_observer.hh | |
entity_observer_fw.hh | |
entity_property_mapper.hh | |
entity_view.hh | |
entity_visitor.hh | |
entity_visitor_fw.hh | |
handle_type_fw.hh | |
ics_editor.hh | |
in_mem_coord_source.hh | |
module_config.hh | |
mol.hh | |
not_connected_error.hh | |
property_id.hh | |
query.hh | |
query_error.hh | |
query_state.hh | |
query_view_wrapper.hh | |
residue_base.hh | |
residue_handle.hh | |
residue_prop.hh | |
residue_view.hh | |
sec_structure.hh | |
spatial_organizer.hh | |
surface.hh | |
surface_builder.hh | |
surface_handle.hh | |
surface_prop.hh | |
torsion_handle.hh | |
transfer_connectivity.hh | |
transform.hh | |
view_op.hh | |
view_type_fw.hh | |
xcs_editor.hh | |
► seq | |
► alg | |
alignment_opts.hh | |
clip_alignment.hh | |
conservation.hh | |
contact_prediction_score.hh | |
contact_weight_matrix.hh | |
default_contact_weight_matrix.hh | |
default_pair_subst_weight_matrix.hh | |
distance_map.hh | |
entropy.hh | |
global_align.hh | |
hmm_pseudo_counts.hh | |
hmm_score.hh | |
ins_del.hh | |
local_align.hh | |
merge_pairwise_alignments.hh | |
module_config.hh | |
pair_subst_weight_matrix.hh | |
semiglobal_align.hh | |
sequence_identity.hh | |
sequence_similarity.hh | |
subst_weight_matrix.hh | |
variance_map.hh | |
wrap_parasail.hh | |
► impl | |
sequence_impl.hh | |
sequence_impl_fw.hh | |
sequence_list_impl.hh | |
sequence_list_impl_fw.hh | |
sequence_list_iterator.hh | |
aligned_column.hh | |
aligned_column_iterator.hh | |
aligned_region.hh | |
alignment_handle.hh | |
invalid_sequence.hh | |
module_config.hh | |
profile_handle.hh | |
sequence_handle.hh | |
sequence_list.hh | |
sequence_op.hh | |
views_from_sequences.hh | |
► test_utils | |
compare_files.hh | |
base.hh | |
boost_filesystem_helper.hh | |
config.hh | |
dllexport.hh | |
dyn_cast.hh | |
fixed_string.hh | |
generic_property.hh | |
integrity_error.hh | |
invalid_handle.hh | |
log.hh | |
log_sink.hh | |
message.hh | |
module_config.hh | |
paged_array.hh | |
platform.hh | |
pod_vector.hh | |
profile.hh | |
ptr_observer.hh | |
range.hh | |
stdint.hh | |
stdint_msc.hh | |
string_ref.hh | |
tri_matrix.hh | |
units.hh | |
version.hh | |
▼ lib64 | |
▼ python3.9 | |
► site-packages | |
► ost | |
► bindings | |
__init__.py | |
blast.py | |
cadscore.py | |
clustalw.py | |
dockq.py | |
dssp.py | |
hbplus.py | |
hhblits.py | |
hhblits2.py | |
hhblits3.py | |
ialign.py | |
kclust.py | |
lga.py | |
mmseqs2.py | |
msms.py | |
naccess.py | |
tmtools.py | |
utils.py | |
► conop | |
__init__.py | |
cleanup.py | |
► db | |
__init__.py | |
► geom | |
__init__.py | |
► gfx | |
__init__.py | |
py_gfx_obj.py | |
► gui | |
► dng | |
__init__.py | |
init.py | |
menu.py | |
superpositiondialog.py | |
termuse.py | |
► scene | |
__init__.py | |
color_options_widget.py | |
color_select_widget.py | |
combo_options_widget.py | |
cpk_widget.py | |
custom_widget.py | |
gradient_editor_widget.py | |
gradient_info_handler.py | |
gradient_list_model.py | |
gradient_preset_widget.py | |
hsc_widget.py | |
immutable_gradient_info_handler.py | |
immutable_preset_info_handler.py | |
init_inspector.py | |
inspector_widget.py | |
line_trace_widget.py | |
map_level_widget.py | |
preset.py | |
preset_editor_list_model.py | |
preset_editor_widget.py | |
preset_info_handler.py | |
preset_list_model.py | |
preset_widget.py | |
query_editor.py | |
remote.py | |
render_mode_widget.py | |
render_op.py | |
render_options_widget.py | |
scene_observer_impl.py | |
scene_selection_helper.py | |
simple_widget.py | |
sline_widget.py | |
toolbar_options_widget.py | |
trace_widget.py | |
tube_widget.py | |
uniform_color_widget.py | |
visibility_op.py | |
wireframe_widget.py | |
__init__.py | |
gosty_startup.py | |
helpwidget.py | |
init_context_menu.py | |
init_menubar.py | |
init_spacenav.py | |
init_splash.py | |
table.py | |
trajectory_viewer.py | |
► img | |
► alg | |
__init__.py | |
__init__.py | |
► info | |
__init__.py | |
► io | |
__init__.py | |
remote.py | |
repository.py | |
► mol | |
► alg | |
__init__.py | |
bb_lddt.py | |
chain_mapping.py | |
contact_score.py | |
dockq.py | |
hbond.py | |
helix_kinks.py | |
lddt.py | |
ligand_scoring.py | |
ligand_scoring_base.py | |
ligand_scoring_lddtpli.py | |
ligand_scoring_scrmsd.py | |
qsscore.py | |
qsscoring.py | |
scoring.py | |
stereochemistry.py | |
structure_analysis.py | |
superpose.py | |
trajectory_analysis.py | |
views.py | |
► mm | |
__init__.py | |
antechamber.py | |
__init__.py | |
► seq | |
► alg | |
__init__.py | |
aaindex.py | |
mat.py | |
renumber.py | |
__init__.py | |
__init__.py | |
dng_startup.py | |
ost_startup.py | |
settings.py | |
stutil.py | |
table.py | |
table_selector.py | |
testutils.py | |
xmlrunner.py | |
▼ modules | |
▼ base | |
doc | |
▼ config | |
base.hh | |
config.hh | |
dllexport.hh | |
version.hh | |
▼ conop | |
doc | |
▼ gfx | |
doc | |
▼ io | |
doc | |
▼ mol | |
▼ base | |
doc | |
▼ seq | |
▼ base | |
doc | |