alg Directory Reference

Files
	alignment_opts.hh
	clip_alignment.hh
	conservation.hh
	contact_prediction_score.hh
	contact_weight_matrix.hh
	default_contact_weight_matrix.hh
	default_pair_subst_weight_matrix.hh
	distance_map.hh
	entropy.hh
	global_align.hh
	hmm_pseudo_counts.hh
	hmm_score.hh
	ins_del.hh
	local_align.hh
	merge_pairwise_alignments.hh
	module_config.hh
	pair_subst_weight_matrix.hh
	semiglobal_align.hh
	sequence_identity.hh
	sequence_similarity.hh
	subst_weight_matrix.hh
	variance_map.hh
	wrap_parasail.hh