bindings – Interfacing external programs¶
The bindings module contains functions and classes that interface with command-line programs commonly used in bioinformatics.
If you would like to write your own wrapper, consult Using External Programs within OpenStructure.
So far, the binding module includes:
dssp- Secondary structure assignmentblast- Search related sequences in databaseshhblits- Search related sequences in databasesmsms– Calculating Molecular Surfacestmtools- Structural superpositionclustalw- Perform multiple sequence alignmenthbplus- Perform hydrogen bond analysiskclust- Perform fast and sensitive clusteringnaccess- Calculate accessible area of a moleculelga- Find 3D similarities in protein structurescadscore- Compare protein structures by difference between physical contactsdockq- Evaluate protein-protein interfaces