Here is a list of all struct and union fields with links to the structures/unions they belong to:
- s -
- s
: Units
- SACCHARIDE
: ChemClass
- Saccharide
: ChemClass
- SACCHARIDES
: ChemType
- Sampling()
: ImageHandle
, ConstImageHandle
, ConstData
, ConstImageHandle
, NullData
, ConstData
, NullData
, ImageHandle
- Save()
: FileBrowser
, SimilarityMatrix
, Forcefield
, GLWin
, Simulation
, Topology
, MessageWidget
, ContextProfileDB
, ProfileDB
, ButtonBar
, Table
, ButtonBox
, DropBox
, PanelBar
, PanelManager
, SplitterPanelBar
, TabbedPanelBar
, LinearCharacterContainer
, Perspective
, PythonShell
, LinearPositionContainer
, SceneWin
, SequenceViewer
, LinearIndexer
, ToolOptionsWin
, Widget
- SaveGeom()
: WidgetGeomHandler
- sc_lddt()
: OligoLDDTScorer
- sc_lddt_scorers()
: OligoLDDTScorer
- Scalar()
: Scalar
- Scale()
: Scale
, CircleMask
, CompositeMask
, ExtentMask
, InvertedMask
, MaskBase
, PolygonMask
, SphericalMask
- SCCounts()
: _lDDTDecomposer
, _QSScoreGreedySearcher
- scene_sel_
: SelHelper
- SceneEnd()
: ColladaExporter
, Exporter
, GostExporter
- SceneMenu()
: SceneMenu
- SceneNode()
: SceneNode
- SceneStart()
: ColladaExporter
, Exporter
, GostExporter
- SceneWin()
: SceneWin
- SceneWinModel()
: SceneWinModel
- score
: AlignedPatch
, HHblitsHit
- Score()
: QSScorer
- ScoreBS()
: lDDTBSScorer
- ScoreICS()
: ContactScorer
- ScoreICSInterface()
: ContactScorer
- ScoreInterface()
: QSScorer
- ScoreIPS()
: ContactScorer
- ScoreIPSInterface()
: ContactScorer
- SCRIPT
: Logger
- scrollTo()
: SequenceTableView
- SDFReader()
: SDFReader
- SDFWriter()
: SDFWriter
- Search()
: HHblits
- searchbox
: DocWidget
- SearchColNames()
: Table
- searched_hmms
: HHblitsHeader
- sec_structures
: ChainData
- secondary_structure_mode
: SequenceViewObject
- SecStrRow()
: SecStrRow
- SecStructure()
: SecStructure
- SecStructureSegment()
: SecStructureSegment
- sel_
: EntityRenderer
- sel_id
: SelStmt
- sel_stacks_
: QueryImpl
- sel_state_
: EntityRenderer
- sel_subset_
: TraceRendererBase
- sel_va_
: EntityRenderer
- sel_values_
: QueryImpl
- sel_view_
: ConnectRendererBase
- Select()
: SelectRefDialog
, Table
, SceneMenu
, ChainHandle
, ChainView
, EntityHandle
, EntityView
, EntityImpl
, ResidueHandle
, ResidueView
- SelectAllViews()
: SceneSelection
- SelectAroundAtom()
: SceneMenu
- SelectAroundResidue()
: SceneMenu
- SelectAtom()
: SceneMenu
- SelectBackbone()
: SceneMenu
- selected()
: DataViewerPanelBase
- selected_chain
: ChainComboBox
- selection_
: RenderOp
, VisibilityOp
- selection_edit_
: QueryEditorWidget
- selection_field
: CalculateSurfaceSettingsDialog
- SelectionChanged()
: Scene
, SceneObserver
, SceneWinModel
, SequenceModel
, SequenceViewer
, SceneObserverImpl
- SelectionModeChanged()
: SceneObserver
, SceneObserverImpl
- SelectionTool()
: SelectionTool
- SelectLigands()
: SceneMenu
- SelectResidue()
: SceneMenu
- SelectSidechains()
: SceneMenu
- SelNode()
: SelNode
- SelStmt()
: SelStmt
- seq_secondary_structure_painter
: SequenceViewObject
- seq_selection_painter
: SequenceViewObject
- seq_text_painter
: SequenceViewObject
- seq_viewer
: AlignmentContextMenu
- seqid
: AlignedPatch
- SeqSearchBar()
: SeqSearchBar
- SeqSecStrPainter()
: SeqSecStrPainter
- SeqSelectionPainter()
: SeqSelectionPainter
- SeqTextPainter()
: SeqTextPainter
- sequence_separation
: lDDTSettings
, lDDTScorer
- SequenceDelegate()
: SequenceDelegate
- SequenceHandle()
: SequenceHandle
- SequenceImpl()
: SequenceImpl
- SequenceList
: ConstSequenceHandle
, SequenceHandle
, ConstSequenceList
, SequenceList
- SequenceListImpl()
: SequenceListImpl
- SequenceListIterator()
: SequenceListIterator< T, I >
- SequenceModel()
: SequenceModel
- SequenceRow()
: SequenceRow
- sequences
: cluster
- SequencesHaveEqualLength()
: SequenceListImpl
, ConstSequenceList
, SequenceList
- SequenceTableView()
: SequenceTableView
- SequenceViewer()
: SequenceViewer
- SequenceViewObject()
: SequenceViewObject
- Serialize()
: AminoAcidSet
, FixedString< LENGTH >
, BuildingBlock
, ResidueNames
, GromacsHydrogenConstructor
, GromacsBlockModifier
, HeuristicHydrogenConstructor
, HeuristicBlockModifier
, Index< 1 >
, Index< 2 >
, Index< 3 >
, Index< 4 >
, Index< 5 >
, Index< 6 >
, Index< 7 >
, Interaction
, Topology
, PagedArray< T, P >
- SerializeHelper()
: SerializeHelper< false, T >
, SerializeHelper< true, T >
- SerializeWriteHelper()
: SerializeWriteHelper< false, T >
, SerializeWriteHelper< true, T >
- set()
: AdjacencyBitmap
- Set()
: ImageHandle
, IOProfileRegistry
, Dist2Mean
, MeanlDDT
, TriMatrix< T >
- set_block_edit_mode_()
: PythonShellWidget
- set_block_type_()
: PythonShellWidget
- set_command_()
: PythonShellWidget
- set_node_colors()
: TraceRendererBase
- set_output_visible_()
: PythonShellWidget
- set_state_()
: WidgetStateSaver< BASE, T1, T2, T3 >
, WidgetStateSaver< BASE, T1, T2 >
, WidgetStateSaver< BASE, T1 >
, WidgetStateSaver< BASE >
- SetA()
: Ellipse2
, Hyperbola2
, ButterworthLowPassFilter
- SetAALines()
: GfxObj
, GfxObjBase
, LineRenderOptions
, IndexedVertexArray
- SetAbsoluteOrigin()
: ImageHandle
, ImageStateBase
, ImageStateImpl< T, D >
- setActive()
: State
, StateMachine
- SetActiveColor()
: PointlistOverlayBase
- SetActiveTool()
: ToolManager
- SetAlignment()
: SequenceViewer
- SetAlpha()
: Color
- SetAlphaBias()
: Scene
- SetAmb()
: Material
- SetAmbientOcclusion()
: Scene
- SetAmbientOcclusionMode()
: Scene
- SetAmbientOcclusionQuality()
: Scene
- SetAmbientOcclusionSize()
: Scene
- SetAmbientOcclusionWeight()
: Scene
- SetAngle()
: EntityImpl
, TorsionImpl
, ICSEditor
- SetAngleICS()
: Dihedral
- SetAnisou()
: AtomBase
, AtomImpl
- SetAntialiasing()
: DataViewer
, DataViewerPanelBase
- SetAppTitle()
: GostyApp
- SetArcDetail()
: PrimList
, CartoonRenderOptions
, CustomRenderOptions
, TraceRenderOptions
- SetAssignTorsions()
: Processor
- SetAtom()
: FragmentImpl
- SetAtom1()
: MMCifInfoEntityBranchLink
- SetAtom2()
: MMCifInfoEntityBranchLink
- SetAtomOriginalPos()
: XCSEditor
- SetAtomPos()
: CoordGroupHandle
, CoordSource
, XCSEditor
- SetAtomTransformedPos()
: XCSEditor
- SetAttribute()
: InfoGroup
, InfoHandle
, EleImpl
, InfoItem
- SetAuthChainID()
: MMCifReader
- SetAuthorList()
: MMCifInfoCitation
- SetAuto()
: ClipWidget
- SetAutoslabMode()
: Scene
- SetB()
: Ellipse2
, Hyperbola2
- SetBackground()
: Scene
- SetBackgroundStereoMode()
: Scene
- SetBackgroundStereoOffset()
: Scene
- SetBeacon()
: Scene
- SetBeaconOff()
: Scene
- SetBFactor()
: AtomBase
, AtomImpl
- SetBias()
: ContextProfile
- SetBins()
: LevelPreview
- SetBitDepth()
: DAT
, IPL
, MRC
, TIF
, DAT
, IPL
, MRC
, TIF
- SetBlocksize()
: DiscreteShrinkFnc
- SetBlue()
: Color
- SetBlur()
: Entity
, Scene
- SetBlurFactors()
: Entity
, SimpleRenderOptions
- SetBlurFlag()
: SimpleRenderOptions
- SetBondLength()
: ICSEditor
- SetBondOrder()
: MMCifInfoEntityBranchLink
, BondHandle
, ConnectorImpl
- SetBondOrderDistance()
: SimpleRenderOptions
- SetBondOrderFlag()
: SimpleRenderOptions
- SetBondRad()
: CustomRenderOptions
- SetBookPublisher()
: MMCifInfoCitation
- SetBookPublisherCity()
: MMCifInfoCitation
- SetBool()
: InfoItem
- SetBoolProp()
: GenericPropContainer< H >
- SetBoolRepr()
: EleImpl
- SetBrush()
: SymbolDrawingStrategy
- SetCAS()
: MMCifInfoCitation
- SetCASPFlag()
: MMCifInfoStructDetails
- SetCategory()
: StarLoopDesc
- SetCellAngles()
: CoordFrame
- SetCellSize()
: CoordFrame
- SetCenter()
: Circle2
, Transform
, Scene
- SetCentralAtom()
: ResidueImpl
, ResidueBase
- SetChain()
: SecStrRow
- SetChainCount()
: ByChainColorOp
- SetChainDescription()
: EditorBase
- SetChainList()
: MMCifInfoBioUnit
- SetChainType()
: EditorBase
- SetCharge()
: AtomBase
, AtomImpl
, Topology
- SetCharges()
: Topology
- SetCheckBondFeasibility()
: Processor
- SetCheckedValue()
: ImageStateImpl< T, D >
- SetChemClass()
: Compound
, ResidueImpl
, ResidueBase
- SetChemLibInfo()
: CompoundLib
- SetChemType()
: Compound
, ResidueImpl
, ResidueBase
- SetCitationType()
: MMCifInfoCitation
- SetCitationTypeBook()
: MMCifInfoCitation
- SetCitationTypeJournal()
: MMCifInfoCitation
- SetCitationTypeUnknown()
: MMCifInfoCitation
- SetClamp()
: GradientColorOp
- SetClashingDistance()
: ClashingDistances
- SetClickPoint()
: InfoPanel
- SetClip()
: GfxObj
, GfxObjBase
- SetClipOffset()
: Entity
, GfxObj
, GfxObjBase
, IndexedVertexArray
- SetClipPlane()
: GfxObj
, GfxObjBase
- SetCMapParameters()
: Topology
- SetCodeLogging()
: TextLogger
- SetColor()
: UniformColorOp
, Entity
, MapIso
, PrimList
, Surface
, IndexedVertexArray
, Measurement
, ColorSelectWidget
- SetColorAt()
: Gradient
- SetColorBlendMode()
: CartoonRenderOptions
- SetColorForAtom()
: Entity
- SetColorMaterial()
: IndexedVertexArray
- SetColorMode()
: DataViewerPanelBase
- SetCommand()
: PythonTokenizer
- SetCompletionPrefix()
: PythonCompleter
, PythonShellWidget
- SetComplex()
: ImageHandle
, ImageStateBase
, FrequencyDomain
, HalfFrequencyDomain
, ImageStateImpl< T, D >
, SpatialDomain
- SetCompoundLib()
: ChemdictParser
- SetConnect()
: Processor
- SetConnectAminoAcids()
: Processor
- SetConnectHetatm()
: Processor
- SetCreationDate()
: Compound
- SetCrosshair()
: PointlistOverlayBase
- SetCrosshairColor()
: CrosshairBaseDrawingStrategy
- SetCullFace()
: IndexedVertexArray
- SetCurrentCommand()
: ShellHistory
- SetCurrentPixel()
: Argand
- SetCursor()
: DataViewerPanelBase
- setData()
: SceneWinModel
, GradientListModel
, PresetEditorListModel
, PresetListModel
- SetData()
: DataViewer
, DataViewerPanelBase
, FFTPanel
, CustomPartNode
, GfxSceneNode
, LabelNode
, RenderModeNode
, RootNode
, SceneNode
, BaseRow
, BaseViewObject
- SetDate()
: MMCifInfoObsolete
- SetDateOriginal()
: MMCifInfoRevisions
- SetDebugOctree()
: MapIso
- SetDefaultCursor()
: DataViewerPanelBase
- SetDefaultFormat()
: GLCanvas
- SetDefaultLib()
: Conopology
- SetDefaultQueryFlags()
: EntityHandle
, EntityImpl
- SetDefinition()
: MMPreprocessor
- SetDelta()
: CoordGroupHandle
- SetDepthDarkening()
: Scene
- SetDepthDarkeningWeight()
: Scene
- SetDescription()
: ChainImpl
- SetDescriptor()
: MMCifInfoStructDetails
- SetDestroyOnClose()
: Widget
- SetDetailColor()
: Entity
- SetDetails()
: MMCifInfoBioUnit
- SetDialect()
: Compound
- SetDiameter()
: PrimList
- SetDiff()
: Material
- SetDir()
: ConnectorImpl
- SetDirAndLength()
: ConnectorImpl
- SetDisplayMode()
: AlignmentViewObject
, BaseViewObject
, SequenceModel
, SequenceViewObject
- SetDisplayPixelValues()
: DataViewerPanelBase
- SetDistanceConstraintParameters()
: Topology
- SetDOI()
: MMCifInfoCitation
- SetDomain()
: PixelSampling
- SetElement()
: AtomBase
, AtomImpl
- SetEmm()
: Material
- SetEnabled()
: EntityRenderer
- setEnabled()
: ComboOptionsWidget
, ToolBarOptionsWidget
- SetEnableRenderMode()
: Entity
- SetEnd()
: Rectangle2
, Extent
- SetEndianess()
: DAT
- SetEndianessOnSave()
: MRC
, Spider
, MRC
, Spider
- SetEntityView()
: EntityViewColorOp
- SetEntryID()
: MMCifInfoStructDetails
- SetEps()
: ButterworthLowPassFilter
- SetEpsilon()
: Topology
- SetEpsilons()
: Topology
- SetErrorLogging()
: TextLogger
- SetException()
: TerminiExceptions
- SetExportAspect()
: Scene
- SetExtent()
: Argand
, PixelSampling
- SetFar()
: Scene
, ClipWidget
- SetFarBounds()
: ClipWidget
- SetFastHighMagnificationDrawing()
: DataViewerPanelBase
- SetFastLowMagnificationDrawing()
: DataViewerPanelBase
- SetFFTSize()
: FFTPanel
- SetFGMDHBondDonorParameters()
: Topology
- SetFilename()
: StarParser
- SetFill()
: Primitive
- SetFillColor()
: Primitive
- SetFixCenter()
: Scene
- SetFixedPickRadius()
: ConnectRendererBase
- SetFixElement()
: RuleBasedProcessor
- SetFlags()
: QueryViewWrapper
- SetFloat()
: InfoItem
- SetFloatProp()
: GenericPropContainer< H >
- SetFloatRepr()
: EleImpl
- SetFog()
: Scene
- SetFogColor()
: Scene
- SetFogFarOffset()
: Scene
- SetFogNearOffset()
: Scene
- SetFogOffsets()
: Scene
- SetFont()
: BaseRow
- SetForcefield()
: FFReader
- SetForceTube()
: CartoonRenderer
- SetFormat()
: TIF
- SetFormula()
: Compound
- SetFOV()
: Scene
- SetFrame()
: GostExporter
- SetFrameCellSize()
: CoordGroupHandle
, CoordSource
- SetFrameDelta()
: CoordSource
- SetFramePositions()
: CoordGroupHandle
, CoordSource
- SetFreq()
: ProfileColumn
- SetFrequencySampling()
: PixelSampling
- SetFudgeLJ()
: Forcefield
, Topology
- SetFudgeQQ()
: Forcefield
, Topology
- SetGamma()
: Ellipse2
, Hyperbola2
, DataViewer
, DataViewerPanelBase
- SetGBSARadii()
: Topology
- SetGBSARadius()
: Topology
- SetGenPairs()
: Forcefield
- SetGeometry()
: LineAverageBase
- SetGfxColor()
: ColorSelectWidget
- SetGradient()
: BasicGradientColorOp
, GradientColorOp
, GradientManager
, GradientPreview
- SetGreen()
: Color
- SetHarmonicAngleParameters()
: Topology
- SetHarmonicBondParameters()
: Topology
- SetHarmonicDistanceRestraintParameters()
: Topology
- SetHarmonicImproperParameters()
: Topology
- SetHarmonicPositionRestraintParameters()
: Topology
- SetHelixEcc()
: CartoonRenderOptions
- SetHelixMode()
: CartoonRenderOptions
- SetHelixProfileType()
: CartoonRenderOptions
- SetHelixThickness()
: CartoonRenderOptions
- SetHelixWidth()
: CartoonRenderOptions
- SetHemiParams()
: Scene
- SetHetAtom()
: AtomBase
, AtomImpl
- SetHistogramBinCount()
: MapIso
- SetHMMData()
: ProfileColumn
- SetHSV()
: Color
- SetHSVMode()
: Gradient
- SetHue()
: Color
- SetID()
: MMCifInfoTransOp
, MMCifInfoBioUnit
, MMCifInfoCitation
, MMCifInfoObsolete
, MMCifInfoTransOp
, MMCifInfoBioUnit
, MMCifInfoCitation
, MMCifInfoObsolete
- SetImageInfo()
: InfoPanel
- SetInchi()
: Compound
- SetInchiKey()
: Compound
- SetIndex()
: ToolOptionEnum
, AtomBase
, AtomImpl
, ResidueView
- SetInfoText()
: OverlayManagerGUI
- setInitialState()
: StateMachine
- SetInsCode()
: ResNum
- SetInSequence()
: ChainHandle
, ChainImpl
- SetInString()
: PythonTokenizer
- SetInt()
: InfoItem
- SetInternalWidget()
: Widget
- SetIntProp()
: GenericPropContainer< H >
- SetIntRepr()
: EleImpl
- SetInvert()
: DataViewer
, DataViewerPanelBase
- SetISBN()
: MMCifInfoCitation
- SetIsLigand()
: ResidueImpl
, ResidueBase
- SetIsPQR()
: PDBWriter
- SetIsProtein()
: ResidueBase
- SetItem()
: PresetEditorListModel
- SetItems()
: ChainComboBox
- SetKeep()
: RenderOp
- SetKey()
: ResidueImpl
- SetLeaf()
: OctreeNode
- SetLength()
: ConnectorImpl
- SetLevel()
: BasicGradientColorOp
, GradientLevelColorOp
, MapIso
, LevelPreview
- SetLHS()
: LogicOPNode
- SetLightDir()
: Scene
- SetLighting()
: IndexedVertexArray
- SetLightProp()
: Scene
- SetLimit()
: LowPassFilter
, HighPassFilter
, GaussianLowPassFilter
, GaussianHighPassFilter
, FermiLowPassFilter
, FermiHighPassFilter
, ButterworthLowPassFilter
- SetLineHalo()
: GfxObj
, GfxObjBase
, IndexedVertexArray
- SetLineWidth()
: GfxObj
, GfxObjBase
, PrimList
, Primitive
, LineRenderOptions
, IndexedVertexArray
, Measurement
- SetLJPairParameters()
: Topology
- SetMapHandle()
: MapHandleColorOp
- SetMask()
: ColorOp
, MaskOverlay
- SetMass()
: MMCifInfoStructDetails
, AtomBase
, AtomImpl
, Topology
- SetMasses()
: Topology
- SetMassMethod()
: MMCifInfoStructDetails
- SetMaster()
: AlignedRegion
- SetMatAmb()
: GfxObj
, GfxObjBase
- SetMatDiff()
: GfxObj
, GfxObjBase
- SetMatEmm()
: GfxObj
, GfxObjBase
- SetMaterial()
: GfxObj
- SetMatrix()
: Transform
, MMCifInfoTransOp
- SetMatShin()
: GfxObj
, GfxObjBase
- SetMatSpec()
: GfxObj
, GfxObjBase
- SetMax()
: OctreeNode
- SetMaximum()
: StatBase
, StatMinMaxBase
, LevelPreview
- SetMaxV()
: GradientColorOp
- SetMean()
: StatBase
- SetMessageCount()
: MessageLevel
- SetMethod()
: MMCifInfo
- SetMethodDetails()
: MMCifInfoBioUnit
- SetMin()
: OctreeNode
- SetMinimum()
: StatBase
, StatMinMaxBase
, LevelPreview
- SetMinV()
: GradientColorOp
- SetMode()
: IndexedVertexArray
- SetModelDetails()
: MMCifInfoStructDetails
- SetModelTypeDetails()
: MMCifInfoStructDetails
- SetModificationDate()
: Compound
- SetMousePoint()
: InfoPanel
- SetMutable()
: CoordSource
- SetName()
: Compound
, ColorOp
, EntityRenderer
, DataViewer
, Overlay
, EntityPartNode
, LabelNode
, SequenceRow
, InfoGroup
, InfoHandle
, EleImpl
, InfoItem
, AtomBase
, EntityBase
, ChainImpl
, EntityImpl
, SequenceImpl
, SequenceHandle
, Preset
, QSscoreEntity
, Table
- SetNames()
: Interaction
- SetNear()
: Scene
, ClipWidget
- SetNearBounds()
: ClipWidget
- SetNearFar()
: Scene
- SetNeff()
: HMMData
, ProfileHandle
- SetNeff_D()
: HMMData
- SetNeff_I()
: HMMData
- SetNewMap()
: MapOctree
- SetNewType()
: EleImpl
- SetNode()
: Polygon2
, PolygonMask
- SetNormal()
: Plane
, IndexedVertexArray
- SetNormalizeOnSave()
: DAT
, DF3
, MRC
, DX
, IPL
, MRC
, PNG
, Situs
, Spider
, TIF
, DAT
, DF3
, DX
, IPL
, PNG
, Situs
, Spider
, TIF
- SetNormalSmoothFactor()
: GfxObj
, CartoonRenderOptions
, TraceRenderOptions
- SetNSF()
: MapIso
- SetNullModel()
: ProfileHandle
- SetNum()
: ResNum
- SetNumber()
: ResidueImpl
- SetOBCScaling()
: Topology
- SetOBCScalings()
: Topology
- SetObservedData()
: DataObserver
- SetObserveScene()
: SequenceViewer
- SetObsolete()
: Compound
- SetObsoleteInfo()
: MMCifInfo
- SetOccupancy()
: AtomBase
, AtomImpl
- SetOffset()
: DataViewer
, DataViewerPanelBase
, SequenceImpl
, SequenceHandle
- SetOneLetterCode()
: SequenceImpl
, Compound
, ResidueImpl
, ResidueBase
, SequenceHandle
- SetOp()
: GradientLevelColorOpWidget
, Preset
, UniformColorOpWidget
, ByElementColorOpWidget
, ByChainColorOpWidget
, RenderOpWidget
, VisibilityOpWidget
- SetOP()
: LogicOPNode
- SetOpacity()
: GfxObjBase
, Entity
, GfxObj
, IndexedVertexArray
- SetOptions()
: LineTraceRenderer
, CPKRenderer
, Entity
, CartoonRenderer
, CustomRenderer
, DebugRenderer
, EntityRenderer
, SimpleRenderer
, SlineRenderer
, TraceRenderer
- SetOrigin()
: Ellipse2
, Hyperbola2
, Sphere
, Rotation3
- SetOutline()
: GfxObj
, GfxObjBase
, Primitive
- SetOutlineColor()
: Primitive
- SetOutlineExpandColor()
: Entity
, GfxObj
, GfxObjBase
, IndexedVertexArray
- SetOutlineExpandFactor()
: Entity
, GfxObj
, GfxObjBase
, IndexedVertexArray
- SetOutlineMaterial()
: IndexedVertexArray
- SetOutlineMode()
: GfxObj
, GfxObjBase
, IndexedVertexArray
- SetOutlineWidth()
: Entity
, GfxObj
, GfxObjBase
, IndexedVertexArray
- SetOutputLogging()
: TextLogger
- SetOverlayLock()
: OverlayManager
- SetOverlayVisibility()
: OverlayManager
- SetP()
: Plane
- SetPageFirst()
: MMCifInfoCitation
- SetPageLast()
: MMCifInfoCitation
- SetParam()
: StereoChemicalParams
, Interaction
- SetParent()
: Node
- SetPassiveColor()
: PointlistOverlayBase
- SetPathCompletionPrefix()
: PythonShellWidget
- SetPDBID()
: MMCifInfoObsolete
- SetPen()
: SymbolDrawingStrategy
, CrosshairBaseDrawingStrategy
- SetPenColor()
: CrosshairBaseDrawingStrategy
, SymbolDrawingStrategy
- SetPeriodicBoxExtents()
: Simulation
- SetPeriodicDihedralParameters()
: Topology
- SetPeriodicImproperParameters()
: Topology
- SetPhasecolor()
: TIF
- SetPhi()
: Rotation3
- SetPickPoint()
: SceneMenu
- SetPixel()
: RasterImage
- SetPixelSampling()
: Data
, PixelSampling
- SetPlane()
: MapSlab
- SetPointSize()
: IndexedVertexArray
- SetPolyMode()
: CartoonRenderOptions
, GfxObj
, GfxObjBase
, IndexedVertexArray
- SetPos()
: MyGradientStop
- SetPosition()
: FFTPanel
- SetPositions()
: Simulation
- SetPreprocessorDefinition()
: FFReader
- SetPreset()
: PresetEditor
- SetPrimaryConnector()
: AtomImpl
- SetProb()
: HMMData
- SetProperty()
: GradientColorOp
- SetProps()
: PointlistOverlayBase
- SetProtein()
: ResidueImpl
- SetPseudoCount()
: ContextProfile
- SetPsi()
: Rotation3
- SetPublishedIn()
: MMCifInfoCitation
- SetPubMed()
: MMCifInfoCitation
- SetQ()
: GaussianFilterBase
, GaussianGradientMagnitudeFilterBase
, GaussianLaplacianFilterBase
- SetQuat()
: Rotation3
- SetQuery()
: QueryEditorWidget
, Entity
, QueryViewWrapper
- SetQueryFlags()
: QueryEditorWidget
- SetQueryView()
: EntityPartNode
, Entity
, CurrentSelectionNode
- SetRadius()
: AtomBase
, Circle2
, Sphere
, PrimList
, AtomImpl
- SetRadiusMult()
: CPKRenderOptions
- SetRange()
: PythonContext
- SetReadCanonicalSeqRes()
: MMCifReader
- SetReadSeqRes()
: PDBReader
, MMCifReader
, PDBReader
- SetReal()
: FrequencyDomain
, ImageHandle
, ImageStateBase
, HalfFrequencyDomain
, ImageStateImpl< T, D >
, SpatialDomain
- SetRed()
: Color
- SetReferenceIndex()
: TrajWidget
- SetRenderMode()
: Entity
, GfxObj
, GfxObjBase
, RenderOp
- SetReplacedBy()
: Compound
- SetReplacedPDBID()
: MMCifInfoObsolete
- SetResidueNumber()
: EditorBase
- SetResolution()
: MMCifInfo
- SetRestrictChains()
: MMCifReader
- SetRevisionsDateOriginal()
: MMCifInfo
- SetRFree()
: MMCifInfo
- SetRGB()
: Color
- SetRHS()
: LogicOPNode
- SetRole()
: SequenceImpl
, SequenceHandle
- SetRot()
: Transform
- SetRotationAngle()
: Rotation3
- SetRotationAxis()
: Rotation3
- SetRotationMatrix()
: Rotation3
- SetRTC()
: Scene
- SetRWork()
: MMCifInfo
- SetSampling()
: ImageStateImpl< T, D >
, ImageStateBase
- SetSat()
: Color
- SetScale()
: Exporter
- SetScore()
: ContactPredictionScoreResult
- SetSecStructure()
: ResidueImpl
, ResidueBase
- SetSelection()
: Entity
, RenderOp
, InfoPanel
, ColorOp
, EntityViewColorOp
, EntityRenderer
, DataViewer
, DataViewerPanelBase
, BaseRow
, BaseViewObject
, SequenceRow
, VisibilityOp
- SetSelectionFlags()
: ColorOp
, RenderOp
, VisibilityOp
- SetSelectionMode()
: Scene
, DataViewerPanelBase
- SetSeqHack()
: BackboneTrace
, Entity
- SetSequence()
: SecStrRow
, SequenceRow
, ProfileHandle
- SetSequenceName()
: AlignmentHandle
- SetSequenceOffset()
: AlignmentHandle
- SetSequenceRole()
: AlignmentHandle
- SetShadingMode()
: Scene
- SetShadow()
: Scene
- SetShadowQuality()
: Scene
- SetShadowWeight()
: Scene
- SetShift()
: MaskOverlay
, FractionalShift
- SetShin()
: Material
- SetShowCenter()
: Scene
- SetShowExportAspect()
: Scene
- SetSigma()
: GaussianFilterBase
, GaussianGradientMagnitudeFilterBase
, GaussianLaplacianFilterBase
, Topology
- SetSigmas()
: Topology
- SetSigned()
: DAT
, TIF
, DAT
- SetSingleAlignment()
: SequenceTableView
- SetSize()
: ColorSelectWidget
- SetSlab()
: DataViewerPanelBase
, DataViewer
- SetSMILES()
: Compound
- SetSolid()
: GfxObjBase
, GfxObj
, IndexedVertexArray
- SetSolidColor()
: GfxObj
, GfxObjBase
, IndexedVertexArray
- SetSpatialOrigin()
: NullData
, ImageStateBase
, ImageStateImpl< T, D >
, FrequencyDomain
, ImageHandle
, SpatialDomain
, Data
, HalfFrequencyDomain
- SetSpatialSampling()
: PixelSampling
, Data
- SetSpec()
: Material
- SetSpeed()
: TrajWidget
- SetSphereDetail()
: CPKRenderOptions
, PrimList
, CustomRenderOptions
- SetSphereMode()
: CPKRenderOptions
- SetSphereRad()
: CustomRenderOptions
- SetSplineDetail()
: SlineRenderOptions
, CartoonRenderOptions
- SetStandardCTer()
: Forcefield
- SetStandardDeviation()
: StatBase
- SetStandardNTer()
: Forcefield
- SetStart()
: Rectangle2
, Extent
- SetStartTime()
: CoordSource
, CoordGroupHandle
- SetState()
: AtomImpl
- SetStereoAlg()
: Scene
- SetStereoDistance()
: Scene
- SetStereoFlip()
: Scene
- SetStereoFormat()
: GLCanvas
- SetStereoIOD()
: Scene
- SetStereoMode()
: Scene
- SetStereoView()
: Scene
- SetStop()
: ButterworthLowPassFilter
- SetStrandEcc()
: CartoonRenderOptions
- SetStrandMode()
: CartoonRenderOptions
- SetStrandProfileType()
: CartoonRenderOptions
- SetStrandThickness()
: CartoonRenderOptions
- SetStrandWidth()
: CartoonRenderOptions
- SetStrictHydrogens()
: RuleBasedProcessor
- SetString()
: SequenceHandle
, SequenceImpl
- SetStringProp()
: GenericPropContainer< H >
- SetStringRepr()
: EleImpl
- SetStructDetails()
: MMCifInfo
- SetStructRefs()
: MMCifInfo
- SetSubformat()
: MRC
- SetSubimage()
: Nanoscope
, TIF
, Nanoscope
- SetSum()
: StatBase
- SetSymbolShape()
: PointlistOverlayBase
- SetSymbolSize()
: SymbolDrawingStrategy
, PointlistOverlayBase
- SetSymbolStrength()
: SymbolDrawingStrategy
- SetSymmetries()
: QSscorer
- SetT()
: FermiHighPassFilter
, FermiLowPassFilter
- SetTabWidth()
: PythonShellWidget
- SetTestMode()
: GLWin
, Scene
, GLCanvas
- SetTexCoord()
: IndexedVertexArray
- SetTextData()
: InfoGroup
, EleImpl
, InfoHandle
- SetTF()
: GfxObj
- SetTheta()
: Rotation3
- SetThresholds()
: SliceFnc
- SetTimeUnit()
: TrajWidget
- settings
: lDDTScorer
, MappedLDDTScorer
, OligoLDDTScorer
- Settings()
: Settings
- SettingsChanged()
: OverlayManagerGUI
, Overlay
- SettingsIgnored()
: WidgetStateSaverConfig
- SetTitle()
: MMCifInfoStructDetails
, MMCifInfoCitation
, MMCifInfoStructDetails
- SetTMat()
: FragmentImpl
- SetToOrigin()
: Exporter
- SetTorsionAngle()
: ICSEditor
- SetTraced()
: AtomImpl
- SetTrans()
: Transform
- SetTransform()
: EntityHandle
, XCSEditor
, Scene
, XCSEditor
, EntityImpl
- SetTubeProfileType()
: CartoonRenderOptions
- SetTubeRadius()
: CartoonRenderOptions
, TraceRenderOptions
- SetTubeRatio()
: CartoonRenderOptions
- SetTwistHack()
: BackboneTrace
, CartoonRenderOptions
- SetTwoSided()
: IndexedVertexArray
- SetType()
: InfoItem
, MMCifInfoTransOp
, ChainImpl
, MMCifInfoTransOp
, EleImpl
, InfoItem
- SetTypes()
: Interaction
- SetUniqueID()
: Widget
- SetUnkAtomTreatment()
: RuleBasedProcessor
- SetUnkResidueTreatment()
: RuleBasedProcessor
- Setup()
: SceneFX
, Shader
- setUp()
: XMLTestRunnerTest
- setup_readonly_state_machine_()
: PythonShellWidget
- setup_state_machine_()
: PythonShellWidget
- SetupTransform()
: Exporter
- SetUreyBradleyAngleParameters()
: Topology
- SetVal()
: Color
- SetValue()
: InfoItem
, ToolOptionNum< T, C >
- SetVariance()
: StatBase
- SetVec3Prop()
: GenericPropContainer< H >
- SetVecRepr()
: EleImpl
- SetVector()
: MMCifInfoTransOp
, InfoItem
, MMCifInfoTransOp
- SetVelocities()
: Simulation
- SetVert()
: IndexedVertexArray
- SetView()
: ColorOp
- SetViewerMax()
: DataViewer
, DataViewerPanelBase
- SetViewerMin()
: DataViewer
, DataViewerPanelBase
- SetViewport()
: Scene
- SetVisible()
: Entity
, EntityPartNode
, VisibilityOp
, Entity
, EntityRenderer
- SetVisited()
: AtomImpl
- SetVolume()
: MMCifInfoCitation
- SetW()
: Vec4
- SetWeight()
: ContextProfile
, SubstWeightMatrix
- SetWidget()
: PanelBarWidgetHolder
- SetWriteMultiModel()
: PDBWriter
- SetX()
: Vec3
, Vec2
, Vec4
- SetY()
: Vec2
, Vec4
, Vec3
- SetYear()
: MMCifInfoCitation
- SetZ()
: Vec4
, Vec3
- SetZeroOccTreatment()
: Processor
- SetZoomScale()
: DataViewer
, DataViewerPanelBase
- shadow_flag
: SceneFX
- shadow_quality
: SceneFX
- shadow_weight
: SceneFX
- SharedPtrType
: ImageStateImpl< T, D >
- shell_
: EditPositionGuard
, BlockStatusGuard
- ShellHistory()
: ShellHistory
- Shift()
: CompositeMask
, MaskBase
, PolygonMask
, SphericalMask
- shift
: GDTResult
- Shift()
: Extent
, ExtentMask
, InvertedMask
, CircleMask
- shift_
: MaskOverlay
- ShiftFnc()
: ShiftFnc
- ShiftLeft()
: AlignedRegion
- ShiftRegion()
: AlignmentHandle
, SequenceImpl
- ShiftRight()
: AlignedRegion
- Show()
: SceneSelection
, GfxNode
- show_alignment
: SelectRefDialog
- show_scores
: SelectRefDialog
- ShowClickedPosition()
: DataViewerPanelBase
- ShowDownsampledMap()
: MapIso
, SceneSelection
- showEvent()
: InspectorDialog
, PythonShellWidget
- ShowExclusive()
: SceneSelection
- ShowGLWin()
: InitMenuBar
- ShowMenu()
: SceneMenu
, ContextMenu
- ShowOriginalMap()
: SceneSelection
, MapIso
- ShowSizeDialog()
: FFTPanel
- ShowSubWindow()
: MainArea
- ShowWidget()
: PanelWidgetContainer
- Shrink()
: MaskBase
- SideBar()
: SideBar
- sidechain_atom_idx
: SidechainAtomRule
- sidechain_atom_rules
: ResidueDefinition
- sig_act_
: PythonInterpreterWorker
- SignalTransition()
: SignalTransition
- SIGNCOLOR
: RasterImage
- SimilarityMatrix()
: SimilarityMatrix
- SimpleRenderer()
: SimpleRenderer
- SimpleRenderOptions()
: SimpleRenderOptions
- Simulation()
: Simulation
- SinFnc()
: SinFnc
- SINGLE
: AnnoType
- single_chain_cache
: _QSScoreGreedySearcher
, _lDDTDecomposer
- single_chain_scorer
: _QSScoreGreedySearcher
, _lDDTDecomposer
- SINGLE_SELECTION
: SelHelper
- Situs()
: Situs
- Size()
: Size
- size()
: StringRef
- Size()
: Size
, ToolOptionEnum
, Size
- size()
: AdjacencyBitmap
, ProfileDB
- Size()
: Size
- size()
: PagedArray< T, P >
, FixedString< LENGTH >
, ProfileHandle
- Size()
: Size
- size()
: ContextProfileDB
, PodVector< T >
- size_
: WidgetStateSaver< BASE, T1, T2 >
, WidgetStateSaver< BASE, T1 >
, WidgetStateSaver< BASE, T1, T2, T3 >
, WidgetStateSaver< BASE >
, FFTPanel
- sizeHint()
: Gutter
- sizeHintForColumn()
: SequenceTableView
- sizeHintForRow()
: SequenceTableView
- SizeRule
: Transformation
- skewness_
: StatBase
- SKIP_SS
: OMF
- slab_center()
: DataViewerPanelBase
- slab_end()
: DataViewerPanelBase
- slab_minus()
: DataViewerPanelBase
- slab_plus()
: DataViewerPanelBase
- slab_start()
: DataViewerPanelBase
- slabChanged()
: DataViewerPanelBase
- Slice()
: SequenceListImpl
, SequenceList
, ConstSequenceList
- SliceFnc()
: SliceFnc
- SlineRenderer()
: SlineRenderer
- SlineRenderOptions()
: SlineRenderOptions
- SMALLER
: EditPositionGuard
- smoothf_
: GfxObj
- SmoothMaskImageBase()
: SmoothMaskImageBase
- SmoothNormals()
: IndexedVertexArray
- SmoothVertices()
: IndexedVertexArray
, GfxObj
- solid_
: GfxObj
- solid_color_
: GfxObj
- solute_dielectric
: Settings
- solvent_dielectric
: Settings
- sort()
: TableModel
- Sort()
: Table
- sorted_indices
: ContactPredictionScoreResult
- SpatialDomain()
: SpatialDomain
- SpatialOrganizer()
: SpatialOrganizer< ITEM, VEC >
- SpearmanCorrel()
: Table
- speed
: SpacenavControl
- Sphere()
: Sphere
- sphere_spinbox_
: CustomWidget
, CPKWidget
- SpherePrim()
: SpherePrim
- SphericalMask()
: SphericalMask
- Spider()
: Spider
- spline_spinbox_
: TubeWidget
, HSCWidget
- SplineEntry()
: SplineEntry
- split()
: StringRef
- split_expression
: TableSelector
- SplitLine()
: StarParser
- splitPath()
: PythonCompleter
- SplitterPanelBar()
: SplitterPanelBar
- SqrtFnc()
: SqrtFnc
- SquareDrawingStrategy()
: SquareDrawingStrategy
- ss_score
: HHblitsHit
- ss_type
: SecStructureSegment
- Stack
: GfxNodeVisitor
- stacked_widget_
: ComboOptionsWidget
- stackedWidget
: ToolBarOptionsWidget
- StarDataItem()
: StarDataItem
- StarLoopDesc()
: StarLoopDesc
- StarParser()
: StarParser
- start()
: StateMachine
- Start()
: PythonInterpreter
- start
: GutterBlock
, CylinderPrim
- start_obj()
: PovState
- StartDrag()
: PanelManager
, PanelWidgetContainer
- startTest()
: _XMLTestResult
- StatAccumulator()
: StatAccumulator< MAX_MOMENT, DATATYPE >
- StatBase()
: StatBase
- State()
: State
- state_
: EntityRenderer
- StateApply()
: ImageList
, ConstImageHandle
, ImageList
, ImageHandle
, ImageList
, ConstImageHandle
, ImageList
, ConstImageHandle
, ImageHandle
, ConstImageHandle
, ImageHandle
, ImageList
, ImageHandle
- StateApplyIP()
: ImageHandle
, ImageList
, ImageHandle
, ImageList
- StateMachine()
: StateMachine
- StateType
: ImageStateImpl< T, D >
- StatMinMaxBase()
: StatMinMaxBase
- Stats()
: Table
- status_
: QueryEditorWidget
, BlockStatusGuard
- StatusMessage()
: Scene
, GLWinBase
, GLCanvas
, GLWin
, Perspective
- std
: BondViolationInfo
, AngleViolationInfo
- std_dev_
: StatBase
- StdDev()
: Table
- steep_opt_rate
: _QSScoreGreedySearcher
, _lDDTGreedySearcher
- Steps()
: Simulation
- stereochecked_aln()
: Scorer
- stereochecked_model()
: Scorer
- stereochecked_target()
: Scorer
- StereoChemicalAngleViolation()
: StereoChemicalAngleViolation
- StereoChemicalBondViolation()
: StereoChemicalBondViolation
- StereoChemicalProps()
: StereoChemicalProps
- StereoChemistryInfo()
: StereoChemistryInfo
- Stop()
: PythonInterpreter
, Gradient::Stop
- StopList
: Gradient
- stops
: GradientEdit
- StopScript()
: PythonInterpreter
, GostyApp
- stopTest()
: _XMLTestResult
- StoreExpression()
: MMCifReader
- StorePreset()
: PresetInfoHandler
- StoreQGradient()
: GradientInfoHandler
- StoreRange()
: MMCifReader
- str
: TextPrim
, StringOrRegexParam
, StringRef
- str_no_whitespace()
: StringRef
- strand_mode_spinbox_
: HSCWidget
- strand_profile_spinbox_
: HSCWidget
- strategy_
: PointlistOverlayBase
- Stream()
: BinaryDataSink
, BinaryDataSource
- StreamLogSink()
: StreamLogSink
- strict_interactions
: Settings
- STRING
: Prop
- STRING_DELIM
: PythonToken
- STRING_LITERAL
: PythonToken
- StringLogSink()
: StringLogSink
- StringOrRegexParam()
: StringOrRegexParam
- StringRef()
: StringRef
- Strip()
: InfoPath
- Submit()
: PreparedStatement
- subst_weights
: AlignmentOpts
- substr()
: StringRef
- SubstractView()
: EntityRenderer
- substructure()
: ReprResult
- substructure_match
: LigandScorer
- SubstWeightMatrix()
: SubstWeightMatrix
- Sum()
: Table
- sum_
: StatBase
- superposed_mdl_bb_pos()
: ReprResult
- superposition()
: QSscorer
- superposition_error
: SuperpositionDialog
- SuperpositionResult()
: SuperpositionResult
- SUPPORTED_TYPES
: Table
- supportedDragActions()
: SceneWinModel
- Surface()
: Surface
- SurfaceHandle()
: SurfaceHandle
- SurfaceImpl()
: SurfaceImpl
- SurfaceVertex()
: SurfaceVertex
- surfname_field
: CalculateSurfaceSettingsDialog
- swallow_
: MouseEventTransition
, KeyEventTransition
- Swap()
: EntityImpl
, ValueHolder< V >
, EntityHandle
, ImageHandle
, SpatialOrganizer< ITEM, VEC >
- swap()
: MeanSquareMinimizer
- Switch()
: ConnectorImpl
- SwitchAtomPos()
: ResidueHandle
, ResidueImpl
- sym_ref_distances()
: lDDTScorer
- sym_ref_distances_ic()
: lDDTScorer
- sym_ref_distances_sc()
: lDDTScorer
- sym_ref_indices()
: lDDTScorer
- sym_ref_indices_ic()
: lDDTScorer
- sym_ref_indices_sc()
: lDDTScorer
- symbol_size
: PointlistOverlayBaseSettings
- symbol_strength
: PointlistOverlayBaseSettings
- SymbolDrawingStrategy()
: SymbolDrawingStrategy
- symbolsize_
: PointlistOverlayBase
, SymbolDrawingStrategy
- symbolstrength_
: PointlistOverlayBase
, SymbolDrawingStrategy
- symm_1()
: QSscorer
- symm_2()
: QSscorer
- symmetric_atoms
: lDDTScorer
- symmetric_compounds
: SymmetrySettings
- symmetry_settings
: lDDTScorer
- SymmetryNode()
: SymmetryNode
- SymmetryOp()
: SymmetryOp