- a -

• Add() : InfoSet , StarLoopDesc , SpatialOrganizer< ITEM, VEC > , AminoAcidSet , StarLoopDesc , MultiClassifier< V, T1, T2, T3, T4, T5, T6, T7 >
• AddAllInclusiveBonds() : EntityView
• AddAltAtomPos() : EditorBase , ResidueImpl
• AddAtom() : ResidueView , Compound , ConnResEntry , ChainView , EntityView
• AddAtomInternal() : EntityView
• AddBond() : Compound , AtomView , EntityView
• AddChain() : EntityView
• AddCompound() : CompoundLib
• AddConn() : ConnResEntry
• AddDefault() : InfoHandle
• AddFrame() : CoordGroupHandle , CoordSource , InMemCoordSource
• AddFrames() : CoordGroupHandle
• AddNode() : Polygon2
• AddPoint() : PointCloud
• AddPointCloud() : PointCloudManager
• AddResidue() : ChainView , EntityView
• AddSecondaryConnector() : AtomImpl
• AddSequence() : AlignmentHandle , SequenceListImpl , ConstSequenceList , SequenceList
• AddSink() : MultiLogSink
• AddTors() : ConnResEntry
• AddTorsion() : EditorBase , EntityImpl , ResidueImpl
• AddTri() : SurfaceImpl , SurfaceHandle
• AddVertex() : SurfaceImpl , SurfaceHandle
• AlignedColumn() : AlignedColumn
• AlignedColumnIterator() : AlignedColumnIterator
• AlignedCuboid() : AlignedCuboid
• AlignedRegion() : AlignedRegion
• AlignmentHandle() : AlignmentHandle
• AlignmentOpts() : AlignmentOpts
• AllAtomPotentialOpts() : AllAtomPotentialOpts
• AminoAcidSet() : AminoAcidSet
• AminoAcidSetIterator() : AminoAcidSetIterator
• AppendResidue() : EditorBase , ChainImpl
• Apply() : Rotation3 , InfoGroup , InfoHandle , AtomHandle , TorsionHandle , AtomView , BondHandle , TorsionImpl , BondHandle , ChainHandle , ChainView , ChainImpl , ChainView , EntityHandle , EntityView , AtomImpl , ConnectorImpl , EntityImpl , ResidueImpl , ResidueHandle , ResidueView , Transform
• ApplyAxisRotation() : Transform
• ApplyTransform() : EntityImpl , XCSEditor
• ApplyXAxisRotation() : Transform
• ApplyXAxisTranslation() : Transform
• ApplyYAxisRotation() : Transform
• ApplyYAxisTranslation() : Transform
• ApplyZAxisRotation() : Transform
• ApplyZAxisTranslation() : Transform
• AreResiduesConsecutive() : Builder
• As() : ImageFormatBase
• AsBool() : InfoItem
• AsFloat() : InfoItem
• AsInt() : InfoItem
• Assign() : GenericPropContainerImpl
• AssignBackBoneTorsionsToResidue() : Builder
• AssignSecondaryStructure() : ChainHandle , ChainImpl
• AssignTorsions() : HeuristicBuilder , RuleBasedBuilder , Builder
• AssignTorsionsToResidue() : RuleBasedBuilder , Builder , HeuristicBuilder
• AsString() : ResNum
• AsVector() : InfoItem
• At() : Plane , Line3 , Ellipse2 , Hyperbola2 , Line2
• AtAngle() : Ellipse2
• AtEnd() : RowSet< R > , IndexIterator< D > , IterRange< I >
• AtomBase() : AtomBase
• AtomGroupEntry() : AtomGroupEntry
• AtomHandle() : AtomHandle
• AtomHandleIter() : AtomHandleIter
• AtomImpl() : AtomImpl
• AtomProp() : AtomProp
• AtomsBegin() : EntityView , ChainHandle , EntityHandle , ResidueHandle
• AtomsEnd() : EntityHandle , EntityView , ResidueHandle , ChainHandle
• AtomSpec() : AtomSpec
• AtomView() : AtomView
• AtomViewIter() : AtomViewIter
• Attach() : SurfaceHandle , SurfaceImpl , SurfaceHandle
• AttachObserver() : EntityHandle , EntityImpl
• AttachView() : SequenceImpl , AlignmentHandle , SequenceHandle , AlignmentHandle , SequenceHandle