- c -

• c_str() : FixedString< LENGTH >
• ca_chains() : QSscoreEntity
• ca_entity() : QSscoreEntity
• CalcDensityForceKernel() : CalcDensityForceKernel
• calcForcesAndEnergy() : DensityForceImpl
• CalcIntpolValue() : ImageStateImpl< T, D >
• CalcIntpolWeights() : ConstData
• call() : unary_dispatch_ip< FNC > , unary_dispatch_op< FNC >
• capacity() : FixedString< LENGTH > , PodVector< T >
• Capture() : CoordSource , CoordGroupHandle
• CaptureInto() : CoordGroupHandle , CoordSource
• Cartesian() : Cartesian
• cbegin() : Polygon2
• CCP4() : CCP4
• cend() : Polygon2
• CenterSpatialOrigin() : ImageHandle , ImageStateImpl< T, D >
• Chain() : Builder
• chain_mapping() : QSscorer
• chain_mapping_scheme() : QSscorer
• ChainBase() : ChainBase
• ChainHandle() : ChainHandle
• ChainImpl() : ChainImpl
• ChainView() : ChainView
• Checker() : Checker
• CheckForCompleteness() : Checker
• CheckForNonStandard() : Checker
• CheckForUnknownAtoms() : Checker
• CheckValidity() : AtomBase , BondHandle , ChainBase , EntityBase , ResidueBase , TorsionHandle , ConstSequenceList , SequenceList
• chem_groups() : QSscoreEntity
• chem_mapping() : QSscorer
• ChemClass() : ChemClass
• ChemdictParser() : ChemdictParser
• ChemType() : ChemType
• Circle2() : Circle2
• CircleMask() : CircleMask
• circular_iter() : circular_iter< T >
• ClashEvent() : ClashEvent
• ClashingDistances() : ClashingDistances
• ClashingInfo() : ClashingInfo
• Cleanup() : HHblits , TempDirWithFiles
• CleanupFailed() : HHblits
• Clear() : LineSlice , FormattedLine , StarLoopDesc , SpatialOrganizer< ITEM, VEC >
• clear() : PagedArray< T, P > , PodVector< T > , ProfileHandle
• ClearCache() : CompoundLib
• ClearDirectionality() : AtomImpl
• ClearPeakList() : HighestPeakSearch3DBase
• ClearProps() : GenericPropContainerImpl , GenericPropContainer< H >
• ClearRange() : LinearCharacterContainer , LinearPositionContainer , PagedArray< T, P >
• ClearState() : MMCifReader
• ClearTransform() : EntityHandle , EntityImpl
• Clip() : RangeHandler
• ClipMinMax() : RangeHandler
• Clone() : LinearNormalizer , LinearRangeNormalizer , LogNormalizer , LogRangeNormalizer , TransmissionToODNormalizer , CircleMask , OpBase , AndOp , OrOp , XorOp , CompositeMask , ExtentMask , ImageStateBase , ImageStateImpl< T, D > , InvertedMask , MaskBase , NormalizerImpl , NoOpNormalizer , PolygonMask , SphericalMask
• CloneState() : ImageStateImpl< T, D >
• clustalw_bin() : QSscorer
• columns_begin() : ProfileHandle
• columns_end() : ProfileHandle
• CompositeMask() : CompositeMask
• Compound() : Compound
• ComputeEnrichment() : Table
• ComputeEnrichmentAUC() : Table
• ComputeLogROCAUC() : Table
• ComputeMCC() : Table
• ComputeROC() : Table
• ComputeROCAUC() : Table
• Connect() : EditorBase , EntityImpl , BuildingBlock
• ConnectAtomsOfResidue() : Processor
• ConnectorImpl() : ConnectorImpl
• ConnectResidues() : Processor
• ConnectToPrev() : Builder
• const_circular_iter() : const_circular_iter< T >
• ConstData() : ConstData
• ConstImageHandle() : ConstImageHandle
• ConstModIPAlgorithm() : ConstModIPAlgorithm
• ConstModOPAlgorithm() : ConstModOPAlgorithm
• ConstSequenceHandle() : ConstSequenceHandle
• ConstSequenceList() : ConstSequenceList
• Contact() : Contact
• ContactPredictionScoreResult() : ContactPredictionScoreResult
• contacts() : QSscoreEntity
• contacts_ca() : QSscoreEntity
• ContactWeightMatrix() : ContactWeightMatrix
• Contains() : Extent , ResidueNames , AminoAcidSet
• ContainsParam() : StereoChemicalParams
• ConversionExists() : GromacsData
• Convert() : LinearNormalizer , LinearRangeNormalizer , LogNormalizer , LogRangeNormalizer , TransmissionToODNormalizer , Normalizer , NormalizeFnc , NoOpNormalizer
• convert() : PairToTupleConverter< T1, T2 > , VectorToListConverter< T >
• Convert() : Normalizer , NoOpNormalizer , LogRangeNormalizer
• ConvertSEQRES() : MMCifReader
• ConvertToStandard() : GromacsData
• Coord2Point() : PixelSampling
• CoordFrame() : CoordFrame
• CoordGroupHandle() : CoordGroupHandle
• CoordSource() : CoordSource
• CoordToIndex() : ImageStateImpl< T, D > , ImageHandle , ConstImageHandle , ImageStateBase
• Copy() : ConstSequenceHandle , ImageHandle , EntityHandle , EntityView , IOProfile , EntityImpl , RuleBasedProcessor , ConstImageHandle , IOProfile , SequenceListImpl , CompoundLib , Database , AlignmentHandle , SequenceImpl , SequenceHandle , HeuristicProcessor , Processor
• CopyFrame() : CoordGroupHandle , CoordSource
• copyParametersToContext() : CalcDensityForceKernel , ReferenceCalcDensityForceKernel
• Correl() : Table
• CosFnc() : CosFnc
• Count() : Table
• CRDReader() : CRDReader
• CRDWriter() : CRDWriter
• Create() : SequenceIOHandlerFactoryBase , DistanceMatrix , EntityIOHandlerFactoryBase , ProfileIOHandlerFactoryBase , ImageHandle , MapIOHandlerFactoryBase , SystemCreator , EntityIOHandlerFactoryBase , SurfaceIOHandlerFactoryBase , TopologyCreator , SurfaceIOHandlerFactoryBase , SequenceIOHandlerFactoryBase , MapIOHandlerFactoryBase , ProfileIOHandlerFactoryBase , CompoundLib
• create_error() : _TestInfo
• create_failure() : _TestInfo
• create_op_() : CompositeMask
• create_success() : _TestInfo
• CreateApolarSet() : AminoAcidSet
• CreateAromaticSet() : AminoAcidSet
• CreateAtom() : EntityImpl
• CreateCompleteSet() : AminoAcidSet
• CreateEmptyView() : EntityView , EntityHandle
• CreateEntity() : EntityHandle
• CreateFullView() : EntityImpl , EntityHandle , EntityView
• createImpl() : DensityForce
• createKernelImpl() : ReferenceDensityKernelFactory
• CreatePolarSet() : AminoAcidSet
• CreatePseudoSet() : AminoAcidSet
• CreateQueryState() : QueryImpl , Query
• CreateResidue() : EntityImpl
• CreateSet() : AminoAcidSet
• CreateThreeStateSet() : AminoAcidSet
• CreateViewFromAtomList() : EntityView
• Crop() : NullData
• CrossCorrelate() : CrossCorrelate
• Cuboid() : Cuboid
• CuboidAxis() : CuboidAxis
• CurrentToken() : QueryLexer
• Cut() : AlignmentHandle , SequenceImpl