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• ICSEditor() : ICSEditor
• Identity() : Mat3 , Mat4 , Mat2
• ImageFormatBase() : ImageFormatBase
• ImageHandle() : ImageHandle
• ImageList() : ImageList
• ImageStateBase() : ImageStateBase
• ImageStateConstModIPAlgorithm() : ImageStateConstModIPAlgorithm< FNC >
• ImageStateConstModIPVisitor() : ImageStateConstModIPVisitor< FNC >
• ImageStateConstModIPVisitorBase() : ImageStateConstModIPVisitorBase
• ImageStateConstModOPAlgorithm() : ImageStateConstModOPAlgorithm< FNC >
• ImageStateConstModOPVisitor() : ImageStateConstModOPVisitor< FNC >
• ImageStateConstModOPVisitorBase() : ImageStateConstModOPVisitorBase
• ImageStateImpl() : ImageStateImpl< T, D >
• ImageStateModIPAlgorithm() : ImageStateModIPAlgorithm< FNC >
• ImageStateModIPVisitor() : ImageStateModIPVisitor< FNC >
• ImageStateModIPVisitorBase() : ImageStateModIPVisitorBase
• ImageStateModOPAlgorithm() : ImageStateModOPAlgorithm< FNC >
• ImageStateModOPVisitor() : ImageStateModOPVisitor< FNC >
• ImageStateModOPVisitorBase() : ImageStateModOPVisitorBase
• ImageStateMorphAlgorithm() : ImageStateMorphAlgorithm< FNC >
• ImageStateMorphVisitor() : ImageStateMorphVisitor< FNC >
• ImageStateMorphVisitorBase() : ImageStateMorphVisitorBase
• ImageStateNonModAlgorithm() : ImageStateNonModAlgorithm< FNC >
• ImageStateNonModVisitor() : ImageStateNonModVisitor< FNC >
• ImageStatePtr() : ImageHandle , ConstImageHandle
• Impl() : AtomBase , BondHandle , ChainBase , EntityBase , Query , ResidueBase , TorsionHandle , ConstSequenceHandle , SequenceHandle , ConstSequenceList , SequenceList
• Import() : MapIODm3Handler , MapIODxHandler , MapIOHandler , MapIOIPLHandler , MapIOJpkHandler , SequenceIOHandler , MapIOMrcHandler , MapIONanoscopeHandler , PromodIOHandler , MapIONanoscopeHandler , MapIOPngHandler , HhmIOHandler , MapIOSitusHandler , MapIOSpiHandler , MapIOTiffHandler , CRDReader , PromodIOHandler , EntityIOCRDHandler , EntityIOHandler , PDBReader , EntityIOHandler , MAEReader , EntityIOMAEHandler , PDBReader , EntityIOMAEHandler , EntityIOMMCIFHandler , EntityIOPDBHandler , PQRReader , EntityIOPQRHandler , EntityIOSDFHandler , SDFReader , SurfaceIOHandler , SurfaceIOMSMSHandler , PirIOHandler , ProfileIOHandler , PromodIOHandler , PssmIOHandler , SDFReader , ClustalIOHandler , FastaIOHandler , PirIOHandler , ProfileIOHandler , PromodIOHandler , PssmIOHandler , SequenceIOHandler , SurfaceIOHandler , SurfaceIOMSMSHandler , ClustalIOHandler , CRDReader , EntityIOCRDHandler , EntityIOHandler , DF3MapIOHandler , EntityIOHandler , MAEReader , EntityIOMAEHandler , MapIOTiffHandler , EntityIOMAEHandler , EntityIOMMCIFHandler , MapIOSitusHandler , EntityIOPDBHandler , PQRReader , EntityIOPQRHandler , EntityIOSDFHandler , MapIOJpkHandler , FastaIOHandler , HhmIOHandler , MapIOHandler , MapIODatHandler , DF3MapIOHandler , MapIODm3Handler , MapIODxHandler , MapIOHandler , MapIOIPLHandler , MapIOJpkHandler , MapIOMrcHandler , MapIONanoscopeHandler , MapIOPngHandler , MapIOSitusHandler , MapIOSpiHandler , MapIOTiffHandler , MapIODatHandler , DF3MapIOHandler
• Inc() : LineIterator , ExtentIterator
• IncICSEditorCount() : EntityImpl
• IncXCSEditorCount() : EntityImpl
• Index() : Index , Index< 1 > , Index< 2 > , Index< 3 > , Index< 4 > , Index< 5 > , Index< 6 > , Index< 7 > , Index< 4 > , Index< 2 >
• IndexBase() : IndexBase< D >
• IndexIterator() : IndexIterator , IndexIterator< D >
• IndexToCoord() : ImageHandle , ConstImageHandle , ImageStateBase , ImageStateImpl< T, D >
• Init() : MMCifReader , Observer , TrajWriter , TrajObserver
• initialize() : ReferenceCalcDensityForceKernel , CalcDensityForceKernel , DensityForceImpl
• InMemCoordSource() : InMemCoordSource
• InsDel() : InsDel
• InSequence() : ChainHandle , ChainImpl , ChainView
• InsertAltAtom() : EditorBase , ResidueImpl
• InsertAtom() : ResidueImpl , EditorBase , ResidueImpl
• InsertChain() : EntityImpl , EditorBase
• InsertFrame() : InMemCoordSource , CoordSource
• InsertResidueAfter() : ChainImpl , EditorBase
• InsertResidueBefore() : ChainImpl , EditorBase
• Instance() : NullData , IOProfileRegistry , Conopology , CHARMMData , GromacsData , IOProfileRegistry , Progress , IOManager , Logger
• IntegrityError() : IntegrityError
• Interaction() : Interaction
• Intersection() : EntityView
• InvalidAlignment() : InvalidAlignment
• Invalidate() : PtrObserver< T >
• InvalidatedPointer() : InvalidatedPointer
• InvalidExtentException() : InvalidExtentException
• InvalidHandle() : InvalidHandle
• InvalidImageHandle() : InvalidImageHandle
• InvalidImageStateVisitor() : InvalidImageStateVisitor
• InvalidObserver() : InvalidObserver
• InvalidSampling() : InvalidSampling
• InvalidSequence() : InvalidSequence
• InverseMatrix() : Transformation
• Invert() : SurfaceHandle , SurfaceImpl
• InvertedMask() : InvertedMask
• IOException() : IOException
• IOFileAlreadyLoadedException() : IOFileAlreadyLoadedException
• IOProfile() : IOProfile
• IOUnknownFormatException() : IOUnknownFormatException
• IPL() : IPL
• is_valid() : DataObserver
• IsActive() : Progress
• IsAminoAcid() : ChemType
• IsAtomIncluded() : ResidueView
• IsAtomInvolved() : Dihedral
• IsAtomSelected() : Query , QueryState
• IsChainIncluded() : EntityView
• IsChainSelected() : QueryState , Query
• IsCitationTypeBook() : MMCifInfoCitation
• IsCitationTypeJournal() : MMCifInfoCitation
• IsCitationTypeUnknown() : MMCifInfoCitation
• IsCoenzyme() : ChemType
• IsCoil() : SecStructure
• IsComplete() : BondTableEntry< ATOM >
• IsComplex() : ConstData
• IsConnectorOf() : ConnectorImpl
• IsDataValid() : QueryViewWrapper , DataObserver
• IsDrug() : ChemType
• IsEmpty() : StereoChemicalParams , ClashingDistances , QueryImpl , Table
• IsEOF() : QueryToken
• IsExtended() : SecStructure
• IsFormed() : HBond
• IsFrequency() : ConstData
• IsHBondedTo() : HBondDonor , HBondAcceptor
• IsHelical() : SecStructure
• IsHetAtom() : AtomBase , AtomImpl
• isInBody() : DensityForce
• IsInside() : SphericalMask , CircleMask , PolygonMask , MaskBase , CompositeMask , ExtentMask , InvertedMask
• IsIon() : ChemType
• IsKnown() : ChemType
• IsLigand() : ResidueImpl , ResidueBase
• IsMutable() : CoordSource
• IsNonCanonical() : ChemType
• IsNucleotide() : ChemType
• IsNucleotideLinking() : ResidueBase , Compound , ChemClass
• IsOutside() : MaskBase
• IsParametrized() : Interaction
• IsPeptideLinking() : ResidueBase , Compound , ChemClass
• IsPlatformAvailable() : Simulation
• IsPolymer() : ChainImpl , ChainBase
• IsPolynucleotide() : ChainImpl , ChainBase
• IsPolypeptide() : ChainImpl , ChainBase
• IsPolysaccharide() : ChainImpl , ChainBase
• IsPQR() : PDBWriter
• IsProtein() : ResidueImpl , ResidueBase
• IsReal() : ConstData
• IsResidueComplete() : CompoundLibBase
• IsResidueIncluded() : ChainView
• IsResidueSelected() : Query , QueryState
• IsSaccharide() : ChemType
• IsSource() : BinaryDataSink , BinaryDataSource
• IsSpatial() : ConstData
• IsTraced() : AtomImpl
• IsTransformationIdentity() : EntityHandle
• IsValid() : ResidueView , ConstImageHandle , AlignmentHandle , CoordGroupHandle , SequenceList , ChainView , EntityBase , EntityView , ResidueBase , QueryImpl , AtomBase , ConstSequenceList , AtomView , ConstSequenceHandle , ImageHandle , lDDTScorer , SurfaceHandle , SequenceHandle , Query , PtrObserver< T > , BondHandle , ChainBase , TorsionHandle
• IsValidElement() : Conopology
• IsVisited() : AtomImpl
• IsWater() : ChemType , ChemClass
• IsXCSDirty() : EntityImpl
• IterativeMinimize() : MeanSquareMinimizer